Reproducible research software development using Python

Software environment

  • Conda environment
  • Virtual environment

Episodes

  • Example project: Simulating the motion of planets
  • Introduction to version control with Git and GitHub
  • Code documentation
  • Collaborative version control and code review
    • Concepts around collaboration
    • Collaborating within the same repository
    • Practicing code review
    • How to contribute changes to repositories that belong to others
    • Conflict resolution, rebasing, and organizational strategies
  • Automated testing
  • How to make the project more reusable
  • Concepts in refactoring and modular code design
  • Demo: From a script towards a workflow
  • Choosing a software license
  • How to publish your code
  • Creating a Python package and deploying it to PyPI

Reference

  • PDF version
  • Credit
  • All lessons
  • CodeRefinery
  • Reusing
Reproducible research software development using Python
  • Collaborative version control and code review
  • Edit on GitHub

Collaborative version control and code review

  • Concepts around collaboration
  • Collaborating within the same repository
  • Practicing code review
  • How to contribute changes to repositories that belong to others
  • Conflict resolution, rebasing, and organizational strategies
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