Hackathon

This time is reserved for you. You can start implementing your own workflow with Snakemake, move your existing workflow to a cluster or follow any of our toy examples, based on interest.

Snakemake in general and on cluster

If you have not used Snakemake before, we recommend to start on your laptop and follow the CodeRefinery Snakemake demo instructions to create your first workflow and run it on your laptop (Installation: Snakemake installation) or within an interactive job on your cluster (resource needs are minimal, 2GB of memory and one core should more than suffice).

You can also use the CodeRefinery example as a base and try and run it on a cluster as batch job or with Hyperqueue instead.

Using Hyperqueue

If you want to try out Hyperqueue, we suggest to follow the Hyperqueue example.