List of exercises

This list is subject to changes until the week before the workshop.

Day 1:

• Copy and browse an existing project
• Committing changes
• Merging changes and contributing to the project

Day 2:

• Cloning a Git repository and working locally
• Inspecting history
• How to turn your project to a Git repo and share it

Day 3:

• Collaborating within the same repository
• Practicing code review
• How to contribute changes to repositories that belong to others

Day 4:

• Recording Computational steps - Snakemake as an exemplary workflow manager
• Environments as time capsules for dependencies
• DEMO - Using docker to run a local service without installing the software

Day 5:

Coming soon!

Day 6:

Coming soon!

Day 7:

Coming soon!

Day 8:

Coming soon!

Day 9:

• Previously this was done as live coding based on input from the audience. We are thinking about changing this lesson slightly and allowing groups to discuss and individuals to practice and possibly submit improvements via pull requests during or after the workshop.
• We will post more information here once we have finalized the lesson.